STRINGSTRING
lepB protein (Prevotella amnii) - STRING interaction network
"lepB" - Signal peptidase I in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lepBSignal peptidase I (510 aa)    
Predicted Functional Partners:
HMPREF9018_1108
WbqC-like protein (204 aa)
 
          0.895
dapB
Dihydrodipicolinate reductase (251 aa)
 
          0.810
HMPREF9018_0258
Uncharacterized protein (1110 aa)
   
          0.733
secD
Export membrane protein SecD ; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (1008 aa)
   
   
  0.730
HMPREF9018_0283
Uncharacterized protein (113 aa)
 
          0.729
yaeT
Outer membrane protein assembly complex, YaeT protein (871 aa)
 
 
  0.690
yidC
Membrane protein YidC ; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins (641 aa)
 
 
  0.682
HMPREF9018_0198
Zinc metalloprotease (466 aa)
 
   
  0.675
yfiO
Outer membrane assembly lipoprotein YfiO (309 aa)
 
          0.655
HMPREF9018_0999
Tetratricopeptide repeat protein (224 aa)
   
          0.651
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (11%) [HD]