STRINGSTRING
HMPREF9018_1143 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1143" - Outer membrane protein, OMP85 family in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1143Outer membrane protein, OMP85 family (756 aa)    
Predicted Functional Partners:
HMPREF9018_1144
RNA methyltransferase, TrmH family (252 aa)
              0.777
HMPREF9018_0693
Uncharacterized protein (264 aa)
   
          0.768
HMPREF9018_1726
Uncharacterized protein (140 aa)
   
          0.758
HMPREF9018_1365
Permease, YjgP/YjgQ family (633 aa)
   
          0.754
HMPREF9018_0753
Uncharacterized protein (952 aa)
   
          0.753
HMPREF9018_0016
Uncharacterized protein (203 aa)
   
          0.728
yfiO
Outer membrane assembly lipoprotein YfiO (309 aa)
   
          0.724
HMPREF9018_1111
Uncharacterized protein (432 aa)
   
          0.721
HMPREF9018_2059
Uncharacterized protein (250 aa)
   
          0.713
HMPREF9018_0262
Outer membrane protein transport protein, Ompp1/FadL/TodX family (435 aa)
   
          0.707
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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