STRINGSTRING
HMPREF9018_1189 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1189" - OmpA family protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1189OmpA family protein (360 aa)    
Predicted Functional Partners:
HMPREF9018_1402
Initiator RepB protein (389 aa)
   
          0.744
HMPREF9018_1574
Uncharacterized protein (384 aa)
   
          0.689
HMPREF9018_1895
Uncharacterized protein (386 aa)
   
          0.685
HMPREF9018_1341
Uncharacterized protein (280 aa)
   
          0.667
HMPREF9018_1677
Uncharacterized protein (163 aa)
   
          0.663
HMPREF9018_1248
Uncharacterized protein (220 aa)
   
          0.648
HMPREF9018_0879
Sporulation and cell division repeat protein (244 aa)
   
          0.647
HMPREF9018_0687
Uncharacterized protein (282 aa)
   
          0.611
HMPREF9018_2034
Uncharacterized protein (42 aa)
   
          0.600
HMPREF9018_0511
HTH domain protein (312 aa)
   
          0.583
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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