STRINGSTRING
HMPREF9018_1199 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1199" - Tetratricopeptide repeat protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1199Tetratricopeptide repeat protein (552 aa)    
Predicted Functional Partners:
recN
Recombination protein N ; May be involved in recombinational repair of damaged DNA (553 aa)
              0.840
HMPREF9018_0725
Uncharacterized protein (159 aa)
   
          0.777
HMPREF9018_0578
Uncharacterized protein (90 aa)
   
          0.777
HMPREF9018_1341
Uncharacterized protein (280 aa)
   
          0.775
HMPREF9018_2047
Uncharacterized protein (178 aa)
   
          0.771
HMPREF9018_1581
Uncharacterized protein (261 aa)
   
          0.770
HMPREF9018_0984
Uncharacterized protein (283 aa)
   
          0.770
HMPREF9018_0894
Uncharacterized protein (387 aa)
   
          0.770
HMPREF9018_0786
Uncharacterized protein (220 aa)
   
          0.766
HMPREF9018_0879
Sporulation and cell division repeat protein (244 aa)
   
          0.765
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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