STRINGSTRING
HMPREF9018_1202 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1202" - Exonuclease in Prevotella amnii
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1202Exonuclease (287 aa)    
Predicted Functional Partners:
dnaN
DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (374 aa)
     
  0.985
HMPREF9018_0308
DNA-directed DNA polymerase (1241 aa)
 
  0.962
dnaX
DNA polymerase III, subunit gamma and tau (590 aa)
   
  0.945
polA
DNA-directed DNA polymerase (945 aa)
   
  0.917
HMPREF9018_1993
HDIG domain protein (474 aa)
 
 
    0.826
rnr
Ribonuclease R ; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (761 aa)
     
  0.811
holA
DNA polymerase III, delta subunit (342 aa)
     
  0.807
coaBC
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (406 aa)
   
        0.802
HMPREF9018_1953
Uncharacterized protein (381 aa)
     
  0.797
rplJ
Ribosomal protein L10 (172 aa)
     
 
  0.781
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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