STRINGSTRING
HMPREF9018_1220 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1220" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1220Uncharacterized protein (215 aa)    
Predicted Functional Partners:
HMPREF9018_1490
Uncharacterized protein (132 aa)
   
          0.628
HMPREF9018_1158
Uncharacterized protein (132 aa)
   
          0.625
HMPREF9018_1782
Uncharacterized protein (260 aa)
   
          0.622
HMPREF9018_0339
TonB-dependent receptor (781 aa)
   
          0.547
HMPREF9018_1895
Uncharacterized protein (386 aa)
   
          0.537
HMPREF9018_2041
Uncharacterized protein (129 aa)
   
          0.536
HMPREF9018_1487
Uncharacterized protein (235 aa)
   
          0.534
HMPREF9018_0151
Uncharacterized protein (511 aa)
   
          0.507
HMPREF9018_1486
Uncharacterized protein (334 aa)
   
          0.494
HMPREF9018_1479
Putative outer membrane protein 40 (405 aa)
   
          0.484
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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