STRINGSTRING
HMPREF9018_1248 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1248" - Uncharacterized protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1248Uncharacterized protein (220 aa)    
Predicted Functional Partners:
HMPREF9018_1402
Initiator RepB protein (389 aa)
   
          0.777
HMPREF9018_0081
Uncharacterized protein (288 aa)
   
          0.700
HMPREF9018_0141
Conjugation system ATPase, TraG family (981 aa)
 
          0.675
HMPREF9018_1247
Uncharacterized protein (182 aa)
              0.664
HMPREF9018_1574
Uncharacterized protein (384 aa)
   
          0.660
HMPREF9018_1207
Uncharacterized protein (458 aa)
   
          0.657
HMPREF9018_1189
OmpA family protein (360 aa)
   
          0.648
HMPREF9018_0136
Conjugative transposon TraK protein (205 aa)
 
          0.640
HMPREF9018_0761
Uncharacterized protein (390 aa)
   
          0.625
HMPREF9018_0892
Tetratricopeptide repeat domain protein (417 aa)
   
          0.601
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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