STRINGSTRING
HMPREF9018_1260 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1260" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1260Uncharacterized protein (532 aa)    
Predicted Functional Partners:
HMPREF9018_1259
TonB-linked outer membrane protein, SusC/RagA family (1103 aa)
 
          0.951
HMPREF9018_1261
Uncharacterized protein (454 aa)
 
          0.943
HMPREF9018_1262
Uncharacterized protein (437 aa)
 
          0.932
HMPREF9018_0616
TonB-linked outer membrane protein, SusC/RagA family (1129 aa)
   
          0.771
HMPREF9018_1208
Uncharacterized protein (388 aa)
   
          0.675
HMPREF9018_0820
TonB-linked outer membrane protein, SusC/RagA family (1036 aa)
   
          0.661
HMPREF9018_0821
Uncharacterized protein (504 aa)
   
          0.639
HMPREF9018_0783
Uncharacterized protein (162 aa)
   
          0.569
HMPREF9018_1821
Uncharacterized protein (528 aa)
   
          0.565
HMPREF9018_1720
Uncharacterized protein (416 aa)
   
          0.553
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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