STRINGSTRING
HMPREF9018_1270 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1270" - Uncharacterized protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1270Uncharacterized protein (52 aa)    
Predicted Functional Partners:
HMPREF9018_1271
Uncharacterized protein (179 aa)
            0.965
HMPREF9018_1269
Uncharacterized protein (50 aa)
              0.859
HMPREF9018_0553
Uncharacterized protein (764 aa)
   
          0.566
HMPREF9018_1073
TonB-dependent receptor plug domain protein (823 aa)
   
          0.558
HMPREF9018_0645
Uncharacterized protein (219 aa)
   
          0.523
HMPREF9018_1084
Uncharacterized protein (154 aa)
   
          0.491
fhs
Formyltetrahydrofolate synthetase (555 aa)
              0.467
HMPREF9018_1915
DNA-binding helix-turn-helix protein (94 aa)
   
          0.466
HMPREF9018_0389
Endonuclease/exonuclease/phosphatase family protein (365 aa)
   
          0.456
HMPREF9018_0254
Thiamine diphosphokinase (224 aa)
   
          0.454
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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