STRINGSTRING
HMPREF9018_1275 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1275" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1275Uncharacterized protein (219 aa)    
Predicted Functional Partners:
HMPREF9018_1274
Uncharacterized protein (51 aa)
              0.752
HMPREF9018_1273
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (297 aa)
              0.670
HMPREF9018_0236
Uncharacterized protein (413 aa)
   
          0.612
HMPREF9018_1894
Uncharacterized protein (354 aa)
   
          0.583
HMPREF9018_1896
Uncharacterized protein (396 aa)
   
          0.552
HMPREF9018_1272
Uncharacterized protein (43 aa)
              0.523
HMPREF9018_1765
Uncharacterized protein (201 aa)
   
          0.508
HMPREF9018_0101
Uncharacterized protein (770 aa)
   
          0.475
HMPREF9018_0237
TonB-dependent receptor plug domain protein (795 aa)
   
          0.465
HMPREF9018_1559
Uncharacterized protein (846 aa)
 
          0.440
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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