STRINGSTRING
HMPREF9018_1287 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1287" - DNA-binding helix-turn-helix protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1287DNA-binding helix-turn-helix protein (101 aa)    
Predicted Functional Partners:
HMPREF9018_1286
Toxin-antitoxin system, toxin component, RelE family (113 aa)
 
          0.939
HMPREF9018_1596
DNA-binding helix-turn-helix protein (97 aa)
   
          0.732
HMPREF9018_1597
Toxin-antitoxin system, toxin component, RelE family (114 aa)
   
          0.719
HMPREF9018_0123
Uncharacterized protein (477 aa)
   
          0.476
HMPREF9018_0235
Transcriptional regulator, TetR family (214 aa)
   
          0.466
HMPREF9018_0966
TonB-dependent receptor (780 aa)
   
          0.455
HMPREF9018_0108
Uncharacterized protein (338 aa)
   
          0.410
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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