STRINGSTRING
HMPREF9018_1297 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1297" - Tetratricopeptide repeat protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1297Tetratricopeptide repeat protein (573 aa)    
Predicted Functional Partners:
HMPREF9018_1296
Uncharacterized protein (306 aa)
 
          0.895
HMPREF9018_1295
Peptidase, M23 family (657 aa)
              0.877
dut
Deoxyuridine 5’-triphosphate nucleotidohydrolase ; This enzyme is involved in nucleotide metabolism- it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA (173 aa)
              0.792
HMPREF9018_1075
Uncharacterized protein (205 aa)
 
          0.598
HMPREF9018_0376
Uncharacterized protein (664 aa)
   
          0.549
HMPREF9018_1299
Putative dGTPase (449 aa)
              0.543
HMPREF9018_1294
Phosphorylase family (291 aa)
              0.536
HMPREF9018_1301
Uncharacterized protein (1135 aa)
 
          0.476
HMPREF9018_2047
Uncharacterized protein (178 aa)
   
          0.470
HMPREF9018_1082
Polysaccharide biosynthesis protein (486 aa)
 
          0.468
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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