STRINGSTRING
recO protein (Prevotella amnii) - STRING interaction network
"recO" - Recombination protein O in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recORecombination protein O ; Involved in DNA repair and RecF pathway recombination (241 aa)    
Predicted Functional Partners:
HMPREF9018_0258
Uncharacterized protein (1110 aa)
   
          0.721
HMPREF9018_1638
Uncharacterized protein (480 aa)
 
          0.716
HMPREF9018_0287
Uncharacterized protein (840 aa)
   
          0.702
HMPREF9018_0717
Uncharacterized protein (850 aa)
   
          0.697
HMPREF9018_0262
Outer membrane protein transport protein, Ompp1/FadL/TodX family (435 aa)
   
          0.688
yfiO
Outer membrane assembly lipoprotein YfiO (309 aa)
 
          0.660
HMPREF9018_1355
Uncharacterized protein (962 aa)
 
          0.648
HMPREF9018_0259
Peptidylprolyl isomerase (715 aa)
   
          0.628
HMPREF9018_1410
Uncharacterized protein (1480 aa)
   
          0.612
HMPREF9018_0170
Uncharacterized protein (312 aa)
   
          0.612
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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