STRINGSTRING
HMPREF9018_1314 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1314" - Plasmid recombination enzyme in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1314Plasmid recombination enzyme (451 aa)    
Predicted Functional Partners:
HMPREF9018_1312
Uncharacterized protein (396 aa)
 
          0.818
HMPREF9018_1313
Uncharacterized protein (303 aa)
 
          0.810
HMPREF9018_1311
DNA binding domain, excisionase family (97 aa)
 
          0.651
HMPREF9018_0362
Integrase (301 aa)
   
          0.582
HMPREF9018_1490
Uncharacterized protein (132 aa)
   
          0.570
HMPREF9018_1158
Uncharacterized protein (132 aa)
   
          0.570
HMPREF9018_2047
Uncharacterized protein (178 aa)
   
          0.532
HMPREF9018_0613
Uncharacterized protein (341 aa)
   
          0.497
HMPREF9018_0611
Uncharacterized protein (391 aa)
   
          0.476
HMPREF9018_0614
Uncharacterized protein (317 aa)
   
          0.424
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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