STRINGSTRING
HMPREF9018_1322 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1322" - Site-specific recombinase, phage integrase family in Prevotella amnii
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1322Site-specific recombinase, phage integrase family (407 aa)    
Predicted Functional Partners:
HMPREF9018_1311
DNA binding domain, excisionase family (97 aa)
   
          0.777
HMPREF9018_1884
3-dehydroquinate synthase (348 aa)
     
    0.699
HMPREF9018_1315
Divergent AAA domain protein (514 aa)
 
          0.604
HMPREF9018_0992
Putative shikimate dehydrogenase (249 aa)
     
    0.533
HMPREF9018_1958
Uncharacterized protein (385 aa)
   
          0.475
ruvC
Holliday junction resolvase RuvC ; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5’-terminal phosphate and a 3’-terminal hydroxyl group (193 aa)
     
  0.468
recN
Recombination protein N ; May be involved in recombinational repair of damaged DNA (553 aa)
   
      0.457
topA
DNA topoisomerase I ; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (782 aa)
         
  0.448
HMPREF9018_1321
DNA-binding helix-turn-helix protein (74 aa)
              0.439
ruvB
Holliday junction ATP-dependent DNA helicase RuvB ; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing (345 aa)
   
 
  0.432
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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