STRINGSTRING
HMPREF9018_1326 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1326" - DNA-binding helix-turn-helix protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1326DNA-binding helix-turn-helix protein (67 aa)    
Predicted Functional Partners:
HMPREF9018_1325
Uncharacterized protein (65 aa)
              0.824
HMPREF9018_1324
Uncharacterized protein (275 aa)
              0.824
HMPREF9018_1915
DNA-binding helix-turn-helix protein (94 aa)
   
          0.606
HMPREF9018_1323
Toxin-antitoxin system, toxin component, Fic family (343 aa)
              0.539
HMPREF9018_0541
Uncharacterized protein (721 aa)
   
          0.503
xseB
Exodeoxyribonuclease VII small subunit ; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides (62 aa)
   
          0.499
HMPREF9018_0670
Uncharacterized protein (493 aa)
   
          0.464
HMPREF9018_0861
Uncharacterized protein (770 aa)
   
          0.439
HMPREF9018_1388
Uncharacterized protein (49 aa)
   
          0.433
HMPREF9018_0457
Uncharacterized protein (493 aa)
   
          0.433
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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