STRINGSTRING
lspA protein (Prevotella amnii) - STRING interaction network
"lspA" - Signal peptidase II in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lspASignal peptidase II ; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (221 aa)    
Predicted Functional Partners:
HMPREF9018_1339
Uncharacterized protein (127 aa)
 
          0.961
ileS
Isoleucyl-tRNA synthetase ; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as ’pretransfer’ editing and involves the hydrolysis of activated Val-AMP. The other activity is designated ’posttransfer’ editing and involves deacylation of mischarged Val-tRNA(Ile) (1220 aa)
 
          0.804
HMPREF9018_0283
Uncharacterized protein (113 aa)
   
          0.705
HMPREF9018_0404
Putative zinc ribbon domain protein (274 aa)
   
          0.691
HMPREF9018_1978
Type I restriction enzyme HsdR protein N-terminal domain protein (148 aa)
 
          0.649
HMPREF9018_0194
Uncharacterized protein (199 aa)
   
          0.642
HMPREF9018_1704
Uncharacterized protein (73 aa)
   
          0.640
HMPREF9018_0258
Uncharacterized protein (1110 aa)
   
          0.617
HMPREF9018_1341
Uncharacterized protein (280 aa)
              0.571
HMPREF9018_0287
Uncharacterized protein (840 aa)
   
          0.550
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (7%) [HD]