STRINGSTRING
HMPREF9018_1342 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1342" - Uncharacterized protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1342Uncharacterized protein (69 aa)    
Predicted Functional Partners:
HMPREF9018_1343
Peptidase, M23 family (545 aa)
              0.856
HMPREF9018_1341
Uncharacterized protein (280 aa)
              0.815
HMPREF9018_1344
Peptidase, C69 family (546 aa)
              0.757
lspA
Signal peptidase II ; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (221 aa)
              0.545
HMPREF9018_1339
Uncharacterized protein (127 aa)
              0.545
rplU
50S ribosomal protein L21 ; This protein binds to 23S rRNA in the presence of protein L20 (105 aa)
              0.417
ileS
Isoleucyl-tRNA synthetase ; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as ’pretransfer’ editing and involves the hydrolysis of activated Val-AMP. The other activity is designated ’posttransfer’ editing and involves deacylation of mischarged Val-tRNA(Ile) (1220 aa)
              0.412
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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