STRINGSTRING
HMPREF9018_1343 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1343" - Peptidase, M23 family in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1343Peptidase, M23 family (545 aa)    
Predicted Functional Partners:
HMPREF9018_1342
Uncharacterized protein (69 aa)
              0.856
HMPREF9018_1341
Uncharacterized protein (280 aa)
              0.812
HMPREF9018_1344
Peptidase, C69 family (546 aa)
              0.769
HMPREF9018_2047
Uncharacterized protein (178 aa)
   
          0.615
HMPREF9018_1896
Uncharacterized protein (396 aa)
   
          0.573
HMPREF9018_1339
Uncharacterized protein (127 aa)
              0.548
lspA
Signal peptidase II ; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (221 aa)
              0.545
serS
Serine--tRNA ligase (429 aa)
              0.527
HMPREF9018_2043
TonB-dependent receptor plug domain protein (1086 aa)
 
          0.526
atpH
F-type ATPase subunit delta ; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (179 aa)
     
      0.520
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (6%) [HD]