STRINGSTRING
HMPREF9018_1344 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1344" - Peptidase, C69 family in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1344Peptidase, C69 family (546 aa)    
Predicted Functional Partners:
HMPREF9018_1343
Peptidase, M23 family (545 aa)
              0.769
HMPREF9018_1342
Uncharacterized protein (69 aa)
              0.757
HMPREF9018_1341
Uncharacterized protein (280 aa)
              0.719
HMPREF9018_0576
Fibronectin type III domain protein (860 aa)
   
          0.568
HMPREF9018_1726
Uncharacterized protein (140 aa)
   
          0.505
lspA
Signal peptidase II ; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (221 aa)
              0.503
HMPREF9018_1339
Uncharacterized protein (127 aa)
              0.501
rplU
50S ribosomal protein L21 ; This protein binds to 23S rRNA in the presence of protein L20 (105 aa)
              0.463
rpmA
50S ribosomal protein L27 (96 aa)
              0.437
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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