STRINGSTRING
serS protein (Prevotella amnii) - STRING interaction network
"serS" - Serine--tRNA ligase in Prevotella amnii
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
serSSerine--tRNA ligase (429 aa)    
Predicted Functional Partners:
thrS
Threonyl-tRNA synthetase (650 aa)
 
 
  0.893
pheT
Phenylalanyl-tRNA synthetase beta subunit (822 aa)
 
   
  0.860
metG
Methionyl-tRNA synthetase ; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (687 aa)
   
   
  0.826
lysS
Lysyl-tRNA synthetase (577 aa)
 
 
  0.819
tsaD
tRNA threonylcarbamoyladenosine biosynthesis protein TsaD ; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction (352 aa)
 
 
  0.810
cysS
Cysteinyl-tRNA synthetase (495 aa)
 
   
  0.808
trpS
Tryptophan--tRNA ligase (362 aa)
   
 
  0.798
HMPREF9018_1079
Phosphoribulokinase/uridine kinase family protein (553 aa)
   
 
  0.787
glyS
Glycyl-tRNA synthetase ; Catalyzes the attachment of glycine to tRNA(Gly) (517 aa)
     
   
  0.779
gyrB
DNA gyrase subunit B ; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (656 aa)
 
   
  0.764
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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