STRINGSTRING
HMPREF9018_1354 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1354" - DNA helicase in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1354DNA helicase (1140 aa)    
Predicted Functional Partners:
HMPREF9018_1638
Uncharacterized protein (480 aa)
 
  0.980
HMPREF9018_1355
Uncharacterized protein (962 aa)
 
     
  0.964
HMPREF9018_0805
Uncharacterized protein (588 aa)
   
  0.962
HMPREF9018_1353
Uncharacterized protein (686 aa)
 
          0.830
HMPREF9018_1410
Uncharacterized protein (1480 aa)
   
          0.701
HMPREF9018_1940
Uncharacterized protein (586 aa)
 
          0.596
polA
DNA-directed DNA polymerase (945 aa)
   
 
  0.586
HMPREF9018_0781
Uncharacterized protein (179 aa)
   
          0.572
HMPREF9018_1352
MBOAT family protein (515 aa)
              0.561
HMPREF9018_0786
Uncharacterized protein (220 aa)
   
          0.527
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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