STRINGSTRING
HMPREF9018_1358 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1358" - GDSL-like protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1358GDSL-like protein (194 aa)    
Predicted Functional Partners:
HMPREF9018_0731
Uncharacterized protein (219 aa)
   
          0.657
HMPREF9018_1604
Uncharacterized protein (292 aa)
       
    0.490
HMPREF9018_0502
Uncharacterized protein (274 aa)
       
    0.490
HMPREF9018_0702
Nitroreductase family protein (247 aa)
       
    0.476
HMPREF9018_0536
SagB-type dehydrogenase domain protein (304 aa)
       
    0.476
HMPREF9018_1084
Uncharacterized protein (154 aa)
   
          0.475
rpe
Ribulose-phosphate 3-epimerase (216 aa)
       
    0.474
HMPREF9018_1359
Uncharacterized protein (127 aa)
              0.471
HMPREF9018_1352
MBOAT family protein (515 aa)
   
        0.443
HMPREF9018_0874
MBOAT family protein (485 aa)
   
        0.443
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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