STRINGSTRING
HMPREF9018_1361 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1361" - TonB-dependent receptor in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1361TonB-dependent receptor (709 aa)    
Predicted Functional Partners:
HMPREF9018_1362
Uncharacterized protein (234 aa)
 
          0.916
HMPREF9018_1363
Uncharacterized protein (348 aa)
 
          0.894
HMPREF9018_0293
Transporter, MotA/TolQ/ExbB proton channel family protein (279 aa)
 
 
  0.787
HMPREF9018_0669
Transporter, MotA/TolQ/ExbB proton channel family protein (263 aa)
   
 
  0.759
HMPREF9018_1814
ABC transporter, ATP-binding protein (235 aa)
   
 
  0.651
HMPREF9018_0202
Iron chelate uptake ABC transporter, FeCT family, permease protein (338 aa)
   
 
  0.640
HMPREF9018_1782
Uncharacterized protein (260 aa)
   
          0.632
HMPREF9018_1145
Putative histidinol-phosphate transaminase (343 aa)
   
      0.550
HMPREF9018_0237
TonB-dependent receptor plug domain protein (795 aa)
 
 
 
  0.528
HMPREF9018_0541
Uncharacterized protein (721 aa)
   
          0.516
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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