STRINGSTRING
HMPREF9018_1362 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1362" - Uncharacterized protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1362Uncharacterized protein (234 aa)    
Predicted Functional Partners:
HMPREF9018_1363
Uncharacterized protein (348 aa)
          0.981
HMPREF9018_1361
TonB-dependent receptor (709 aa)
 
          0.916
HMPREF9018_0072
SusD family protein (450 aa)
   
          0.693
HMPREF9018_0528
Uncharacterized protein (159 aa)
   
          0.617
HMPREF9018_1006
Uncharacterized protein (261 aa)
   
          0.604
HMPREF9018_1540
Transcriptional regulator, LuxR family (251 aa)
   
          0.582
HMPREF9018_1122
Uncharacterized protein (238 aa)
   
          0.577
HMPREF9018_1786
Relaxase/mobilization nuclease domain protein (424 aa)
   
          0.574
HMPREF9018_0073
TonB-linked outer membrane protein, SusC/RagA family (1032 aa)
   
          0.562
HMPREF9018_0204
Transporter, major facilitator family protein (403 aa)
   
          0.550
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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