STRINGSTRING
HMPREF9018_1363 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1363" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1363Uncharacterized protein (348 aa)    
Predicted Functional Partners:
HMPREF9018_1362
Uncharacterized protein (234 aa)
          0.981
HMPREF9018_1361
TonB-dependent receptor (709 aa)
 
          0.894
HMPREF9018_0072
SusD family protein (450 aa)
   
          0.734
HMPREF9018_0528
Uncharacterized protein (159 aa)
   
          0.717
HMPREF9018_1482
Uncharacterized protein (147 aa)
   
          0.628
HMPREF9018_0073
TonB-linked outer membrane protein, SusC/RagA family (1032 aa)
   
          0.596
HMPREF9018_1415
Uncharacterized protein (859 aa)
   
          0.592
HMPREF9018_1789
Uncharacterized protein (318 aa)
   
          0.576
HMPREF9018_1786
Relaxase/mobilization nuclease domain protein (424 aa)
   
          0.574
HMPREF9018_1278
Uncharacterized protein (213 aa)
   
          0.573
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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