STRINGSTRING
HMPREF9018_1373 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1373" - Uncharacterized protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1373Uncharacterized protein (297 aa)    
Predicted Functional Partners:
rsmI
rRNA (cytidine-2’-O-)-methyltransferase RsmI ; Catalyzes the 2’-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA (231 aa)
              0.792
HMPREF9018_0500
Antioxidant, AhpC/TSA family (384 aa)
   
          0.755
HMPREF9018_1726
Uncharacterized protein (140 aa)
   
          0.753
HMPREF9018_0016
Uncharacterized protein (203 aa)
   
          0.752
HMPREF9018_0011
Uncharacterized protein (205 aa)
   
          0.746
HMPREF9018_0894
Uncharacterized protein (387 aa)
   
          0.732
HMPREF9018_0326
Sporulation and cell division repeat protein (159 aa)
   
          0.727
HMPREF9018_0350
Uncharacterized protein (258 aa)
   
          0.725
HMPREF9018_0885
Uncharacterized protein (479 aa)
   
          0.708
HMPREF9018_0261
Uncharacterized protein (219 aa)
   
          0.699
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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