STRINGSTRING
HMPREF9018_1408 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1408" - TonB-dependent receptor in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1408TonB-dependent receptor (692 aa)    
Predicted Functional Partners:
glf
UDP-galactopyranose mutase (387 aa)
       
      0.790
HMPREF9018_0293
Transporter, MotA/TolQ/ExbB proton channel family protein (279 aa)
 
  0.787
HMPREF9018_0669
Transporter, MotA/TolQ/ExbB proton channel family protein (263 aa)
   
  0.741
HMPREF9018_0582
Uncharacterized protein (312 aa)
   
          0.629
HMPREF9018_0965
Uncharacterized protein (88 aa)
   
          0.596
HMPREF9018_0986
Uncharacterized protein (90 aa)
   
          0.587
HMPREF9018_1300
Uncharacterized protein (319 aa)
   
          0.577
HMPREF9018_0202
Iron chelate uptake ABC transporter, FeCT family, permease protein (338 aa)
 
 
 
  0.517
rpsA
30S ribosomal protein S1 (593 aa)
 
          0.502
HMPREF9018_0203
TonB-dependent receptor plug domain protein (683 aa)
 
 
 
  0.486
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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