STRINGSTRING
HMPREF9018_1414 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1414" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1414Uncharacterized protein (272 aa)    
Predicted Functional Partners:
HMPREF9018_1415
Uncharacterized protein (859 aa)
 
          0.978
HMPREF9018_1836
SusD family protein (523 aa)
   
          0.764
HMPREF9018_0481
Uncharacterized protein (871 aa)
 
          0.695
HMPREF9018_1006
Uncharacterized protein (261 aa)
   
          0.670
HMPREF9018_1379
Putative membrane protein (311 aa)
   
          0.667
HMPREF9018_1835
TonB-linked outer membrane protein, SusC/RagA family (1069 aa)
   
          0.648
HMPREF9018_0408
Uncharacterized protein (688 aa)
   
          0.638
HMPREF9018_0958
Site-specific recombinase, phage integrase family (405 aa)
   
          0.551
HMPREF9018_1018
BNR/Asp-box repeat protein (445 aa)
   
          0.544
HMPREF9018_0072
SusD family protein (450 aa)
   
          0.542
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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