STRINGSTRING
HMPREF9018_1458 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1458" - DNA binding domain, excisionase family in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1458DNA binding domain, excisionase family (96 aa)    
Predicted Functional Partners:
HMPREF9018_1457
Uncharacterized protein (169 aa)
 
       
0.883
HMPREF9018_0362
Integrase (301 aa)
   
          0.737
HMPREF9018_0865
Uncharacterized protein (87 aa)
   
          0.677
HMPREF9018_1459
ThiF family protein (257 aa)
              0.586
HMPREF9018_1455
Virulence-associated protein E (369 aa)
 
          0.450
HMPREF9018_1456
Uncharacterized protein (64 aa)
              0.444
HMPREF9018_0525
Site-specific recombinase, phage integrase family (409 aa)
   
          0.435
HMPREF9018_1152
Uncharacterized protein (349 aa)
   
          0.428
HMPREF9018_1485
Helicase C-terminal domain protein (491 aa)
   
          0.427
HMPREF9018_1467
Site-specific recombinase, phage integrase family (409 aa)
   
          0.408
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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