STRINGSTRING
HMPREF9018_1485 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1485" - Helicase C-terminal domain protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1485Helicase C-terminal domain protein (491 aa)    
Predicted Functional Partners:
HMPREF9018_0637
Uncharacterized protein (1507 aa)
          0.969
HMPREF9018_1802
N-6 DNA Methylase (1534 aa)
          0.963
HMPREF9018_0634
Uncharacterized protein (136 aa)
   
          0.646
HMPREF9018_1799
Uncharacterized protein (134 aa)
   
          0.644
HMPREF9018_0238
DNA binding domain, excisionase family (103 aa)
   
          0.617
HMPREF9018_1149
Uncharacterized protein (155 aa)
   
          0.603
HMPREF9018_0638
DNA topoisomerase (671 aa)
 
          0.564
HMPREF9018_1803
DNA topoisomerase (459 aa)
 
          0.554
HMPREF9018_2064
Uncharacterized protein (155 aa)
 
          0.549
HMPREF9018_1798
DNA binding domain, excisionase family (104 aa)
   
          0.540
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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