STRINGSTRING
HMPREF9018_1489 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1489" - Toprim domain protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1489Toprim domain protein (687 aa)    
Predicted Functional Partners:
HMPREF9018_1490
Uncharacterized protein (132 aa)
          0.945
HMPREF9018_1488
Uncharacterized protein (102 aa)
 
          0.940
HMPREF9018_1156
DNA binding domain, excisionase family (102 aa)
 
          0.679
HMPREF9018_1158
Uncharacterized protein (132 aa)
          0.630
HMPREF9018_1486
Uncharacterized protein (334 aa)
              0.616
HMPREF9018_1487
Uncharacterized protein (235 aa)
              0.607
HMPREF9018_0340
Uncharacterized protein (469 aa)
 
          0.535
HMPREF9018_1164
Uncharacterized protein (467 aa)
 
          0.521
HMPREF9018_0740
TonB-dependent receptor (783 aa)
   
          0.513
HMPREF9018_0741
Uncharacterized protein (234 aa)
   
          0.487
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (12%) [HD]