STRINGSTRING
rlpA protein (Prevotella amnii) - STRING interaction network
"rlpA" - Putative rare lipoprotein A double-psi beta-barrel protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlpAPutative rare lipoprotein A double-psi beta-barrel protein (227 aa)    
Predicted Functional Partners:
pgi
Phosphohexose isomerase (452 aa)
       
    0.766
fba
Fructose-1,6-bisphosphate aldolase, class II (337 aa)
       
    0.759
pfkA
Phosphohexokinase ; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis (325 aa)
       
    0.733
HMPREF9018_0579
Diphosphate--fructose-6-phosphate 1-phosphotransferase (547 aa)
       
    0.733
HMPREF9018_1523
Glutamate dehydrogenase (447 aa)
              0.646
HMPREF9018_1565
Putative penicillin-binding protein 2 (711 aa)
   
   
  0.465
HMPREF9018_1869
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family (172 aa)
   
   
  0.460
HMPREF9018_0163
Penicillin-binding protein, transpeptidase domain protein (717 aa)
   
   
  0.458
engB
Probable GTP-binding protein EngB ; Necessary for normal cell division and for the maintenance of normal septation (201 aa)
         
  0.446
HMPREF9018_0511
HTH domain protein (312 aa)
 
          0.431
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (11%) [HD]