STRINGSTRING
HMPREF9018_1551 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1551" - Site-specific recombinase, phage integrase family in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1551Site-specific recombinase, phage integrase family (409 aa)    
Predicted Functional Partners:
HMPREF9018_1549
Site-specific recombinase, phage integrase family (431 aa)
 
       
0.817
HMPREF9018_0865
Uncharacterized protein (87 aa)
   
          0.761
HMPREF9018_1128
Uncharacterized protein (72 aa)
   
          0.644
HMPREF9018_1533
Uncharacterized protein (139 aa)
   
          0.632
HMPREF9018_1548
Uncharacterized protein (129 aa)
              0.614
HMPREF9018_0549
Uncharacterized protein (153 aa)
   
          0.557
HMPREF9018_1859
Uncharacterized protein (155 aa)
   
          0.545
HMPREF9018_1752
Uncharacterized protein (133 aa)
   
          0.512
HMPREF9018_0526
Site-specific recombinase, phage integrase family (431 aa)
 
       
0.476
HMPREF9018_1465
Relaxase/mobilization nuclease domain protein (353 aa)
   
          0.441
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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