STRINGSTRING
HMPREF9018_1657 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1657" - TonB-dependent receptor plug domain protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1657TonB-dependent receptor plug domain protein (686 aa)    
Predicted Functional Partners:
HMPREF9018_1656
Uncharacterized protein (39 aa)
              0.779
HMPREF9018_1176
Transporter, small conductance mechanosensitive ion channel MscS family protein (792 aa)
   
          0.761
HMPREF9018_1037
Uncharacterized protein (394 aa)
   
          0.739
HMPREF9018_0003
Transporter, major facilitator family protein (391 aa)
   
          0.705
HMPREF9018_1073
TonB-dependent receptor plug domain protein (823 aa)
   
          0.696
HMPREF9018_1415
Uncharacterized protein (859 aa)
   
          0.660
HMPREF9018_1703
Uncharacterized protein (203 aa)
   
          0.615
HMPREF9018_2054
Tetratricopeptide repeat protein (397 aa)
   
          0.611
HMPREF9018_1853
Uncharacterized protein (388 aa)
   
          0.610
HMPREF9018_1207
Uncharacterized protein (458 aa)
   
          0.610
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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