STRINGSTRING
HMPREF9018_1669 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1669" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1669Uncharacterized protein (790 aa)    
Predicted Functional Partners:
HMPREF9018_1668
Uncharacterized protein (259 aa)
          0.981
HMPREF9018_1667
Uncharacterized protein (444 aa)
 
          0.962
HMPREF9018_1670
ABC transporter, ATP-binding protein (579 aa)
 
          0.885
HMPREF9018_1671
ABC transporter, ATP-binding protein (584 aa)
 
          0.878
HMPREF9018_1672
Transcriptional regulator, TetR family (204 aa)
 
          0.805
HMPREF9018_1666
Uncharacterized protein (133 aa)
              0.652
cdsA
Phosphatidate cytidylyltransferase (288 aa)
       
    0.485
HMPREF9018_2008
MATE efflux family protein (444 aa)
       
    0.479
HMPREF9018_1714
MATE efflux family protein (450 aa)
       
    0.479
HMPREF9018_0771
MATE efflux family protein (456 aa)
       
    0.479
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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