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STRINGSTRING
EFN91588.1 protein (Prevotella amnii) - STRING interaction network
"EFN91588.1" - annotation not available in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFN91588.1annotation not available (73 aa)    
Predicted Functional Partners:
EFN90540.1
annotation not available (127 aa)
   
          0.777
EFN91626.1
annotation not available (215 aa)
   
          0.733
EFN91055.1
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (113 aa)
   
          0.726
EFN90708.1
HDIG domain protein; Identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277 (474 aa)
   
          0.701
EFN91967.1
Putative zinc ribbon domain protein; Identified by match to protein family HMM PF02591 (274 aa)
   
          0.671
yaeT
Outer membrane protein assembly complex, YaeT protein; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303 (871 aa)
   
          0.657
glmM
Phosphoglucosamine mutase; Identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR03990 (464 aa)
   
          0.647
EFN90286.1
Starch synthase catalytic domain protein; Identified by match to protein family HMM PF08323 (269 aa)
   
          0.616
rpsU
30S ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family (63 aa)
   
          0.616
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family (221 aa)
   
          0.598
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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