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greA protein (Prevotella amnii) - STRING interaction network
"greA" - Transcript cleavage factor GreA in Prevotella amnii
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second shell of interactors
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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greATranscript cleavage factor GreA ; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3’terminus. GreA releases sequences of 2 to 3 nucleotides (156 aa)    
Predicted Functional Partners:
rpoA
Transcriptase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (332 aa)
 
 
 
  0.855
HMPREF9018_1715
Histidine triad domain protein (132 aa)
              0.854
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1457 aa)
     
 
  0.853
rpoB
Transcriptase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1269 aa)
 
 
 
  0.786
HMPREF9018_1079
Phosphoribulokinase/uridine kinase family protein (553 aa)
   
 
  0.784
nusA
Transcription termination/antitermination protein NusA ; Participates in both transcription termination and antitermination (421 aa)
 
 
 
  0.693
murI
Glutamate racemase ; Provides the (R)-glutamate required for cell wall biosynthesis (278 aa)
     
 
  0.653
HMPREF9018_0587
FtsK/SpoIIIE family protein (820 aa)
 
        0.632
rho
ATP-dependent helicase Rho ; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho’s RNA-dependent ATPase activity, and release of the mRNA from the DNA template (657 aa)
 
 
 
  0.577
nadD
Nicotinate mononucleotide adenylyltransferase ; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) (189 aa)
 
 
      0.545
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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