STRINGSTRING
HMPREF9018_1750 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1750" - Uncharacterized protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1750Uncharacterized protein (220 aa)    
Predicted Functional Partners:
HMPREF9018_1393
Uncharacterized protein (193 aa)
 
          0.974
HMPREF9018_1751
Uncharacterized protein (272 aa)
              0.859
HMPREF9018_0533
Radical SAM domain protein (425 aa)
   
          0.778
HMPREF9018_0039
Radical SAM domain protein (426 aa)
   
          0.775
HMPREF9018_1543
Radical SAM domain protein (452 aa)
   
          0.772
HMPREF9018_0478
Radical SAM domain protein (416 aa)
   
          0.608
secD
Export membrane protein SecD ; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (1008 aa)
         
  0.602
HMPREF9018_0529
ABC transporter, ATP-binding protein (729 aa)
 
          0.543
HMPREF9018_1546
ABC transporter, ATP-binding protein (733 aa)
 
          0.539
HMPREF9018_0475
ABC transporter, ATP-binding protein (725 aa)
 
          0.526
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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