STRINGSTRING
HMPREF9018_1789 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1789" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1789Uncharacterized protein (318 aa)    
Predicted Functional Partners:
HMPREF9018_1788
Uncharacterized protein (41 aa)
              0.859
HMPREF9018_1482
Uncharacterized protein (147 aa)
   
          0.680
HMPREF9018_0469
Uncharacterized protein (175 aa)
   
          0.657
HMPREF9018_0964
Uncharacterized protein (990 aa)
   
          0.625
HMPREF9018_1755
Uncharacterized protein (364 aa)
   
          0.612
HMPREF9018_1363
Uncharacterized protein (348 aa)
   
          0.576
HMPREF9018_0856
Uncharacterized protein (341 aa)
   
          0.566
HMPREF9018_0645
Uncharacterized protein (219 aa)
   
          0.529
HMPREF9018_1997
Uncharacterized protein (366 aa)
   
          0.518
HMPREF9018_2001
TonB-dependent receptor (763 aa)
   
          0.512
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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