STRINGSTRING
HMPREF9018_1801 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1801" - Site-specific recombinase, phage integrase family in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1801Site-specific recombinase, phage integrase family (417 aa)    
Predicted Functional Partners:
HMPREF9018_1800
Site-specific recombinase, phage integrase family (439 aa)
 
       
0.871
HMPREF9018_1799
Uncharacterized protein (134 aa)
              0.628
HMPREF9018_0632
Uncharacterized protein (168 aa)
   
          0.589
HMPREF9018_1797
Uncharacterized protein (168 aa)
   
          0.569
HMPREF9018_1798
DNA binding domain, excisionase family (104 aa)
   
          0.563
HMPREF9018_0238
DNA binding domain, excisionase family (103 aa)
   
          0.554
HMPREF9018_0633
DNA binding domain, excisionase family (104 aa)
   
          0.530
HMPREF9018_1802
N-6 DNA Methylase (1534 aa)
              0.462
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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