STRINGSTRING
HMPREF9018_1804 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1804" - DNA topoisomerase III in Prevotella amnii
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1804DNA topoisomerase III (163 aa)    
Predicted Functional Partners:
HMPREF9018_1803
DNA topoisomerase (459 aa)
          0.993
HMPREF9018_0706
ATP-dependent DNA helicase, RecQ family (631 aa)
 
  0.955
recQ
ATP-dependent DNA helicase RecQ (727 aa)
 
  0.952
polA
DNA-directed DNA polymerase (945 aa)
   
  0.885
HMPREF9018_1953
Uncharacterized protein (381 aa)
   
  0.863
recA
Recombinase A ; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (341 aa)
   
  0.811
dndD
DNA sulfur modification protein DndD (695 aa)
   
  0.792
HMPREF9018_1301
Uncharacterized protein (1135 aa)
   
  0.787
HMPREF9018_1802
N-6 DNA Methylase (1534 aa)
              0.784
dinB
DNA polymerase IV ; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3’-5’ exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII (364 aa)
   
  0.776
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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