STRINGSTRING
HMPREF9018_1836 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1836" - SusD family protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1836SusD family protein (523 aa)    
Predicted Functional Partners:
HMPREF9018_1835
TonB-linked outer membrane protein, SusC/RagA family (1069 aa)
 
          0.964
HMPREF9018_1415
Uncharacterized protein (859 aa)
   
          0.773
HMPREF9018_1414
Uncharacterized protein (272 aa)
   
          0.764
HMPREF9018_1851
TonB-linked outer membrane protein, SusC/RagA family (1021 aa)
 
          0.686
HMPREF9018_1175
Uncharacterized protein (295 aa)
   
          0.670
HMPREF9018_0072
SusD family protein (450 aa)
   
          0.669
HMPREF9018_1318
Putative DNA sulfur modification protein DndE (528 aa)
   
          0.664
HMPREF9018_0836
Uncharacterized protein (355 aa)
   
          0.649
HMPREF9018_1657
TonB-dependent receptor plug domain protein (686 aa)
   
          0.599
HMPREF9018_1834
Uncharacterized protein (41 aa)
              0.596
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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