STRINGSTRING
HMPREF9018_1852 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1852" - SusD family protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1852SusD family protein (544 aa)    
Predicted Functional Partners:
HMPREF9018_1853
Uncharacterized protein (388 aa)
 
          0.945
HMPREF9018_1851
TonB-linked outer membrane protein, SusC/RagA family (1021 aa)
 
          0.938
HMPREF9018_1088
Uncharacterized protein (706 aa)
 
          0.746
HMPREF9018_1846
Alpha amylase, catalytic domain protein (609 aa)
 
          0.713
HMPREF9018_1835
TonB-linked outer membrane protein, SusC/RagA family (1069 aa)
 
          0.666
HMPREF9018_2043
TonB-dependent receptor plug domain protein (1086 aa)
   
          0.657
HMPREF9018_1850
Transcriptional regulator, LacI family (350 aa)
 
          0.524
HMPREF9018_1836
SusD family protein (523 aa)
   
          0.506
HMPREF9018_1849
Transporter, major facilitator family protein (442 aa)
 
          0.476
HMPREF9018_2059
Uncharacterized protein (250 aa)
   
          0.469
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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