STRINGSTRING
HMPREF9018_1863 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1863" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1863Uncharacterized protein (248 aa)    
Predicted Functional Partners:
HMPREF9018_1862
ABC transporter, ATP-binding protein (259 aa)
 
 
  0.994
HMPREF9018_0698
Uncharacterized protein (326 aa)
 
   
    0.903
HMPREF9018_1864
ABC transporter, ATP-binding protein (283 aa)
 
   
    0.827
HMPREF9018_1015
Outer membrane protein (172 aa)
   
          0.600
lolD
Lipoprotein-releasing system ATP-binding protein LolD ; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner (228 aa)
   
 
    0.527
HMPREF9018_0970
Sugar isomerase, KpsF/GutQ family (324 aa)
   
        0.451
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase ; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine (437 aa)
   
        0.449
alr
Alanine racemase (849 aa)
   
        0.427
dnaB
Replicative DNA helicase ; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity (505 aa)
   
        0.423
radA
DNA repair protein radA ; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3’ invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA’s homology-searching function (465 aa)
   
        0.422
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (6%) [HD]