STRINGSTRING
HMPREF9018_1869 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1869" - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_18693-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family (172 aa)    
Predicted Functional Partners:
kdsB
CMP-2-keto-3-deoxyoctulosonic acid synthase ; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria (245 aa)
 
  0.998
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase (250 aa)
   
  0.997
HMPREF9018_0970
Sugar isomerase, KpsF/GutQ family (324 aa)
 
 
  0.977
HMPREF9018_1870
Uncharacterized protein (265 aa)
              0.877
waaA
3-deoxy-D-manno-octulosonic-acid transferase (406 aa)
   
 
  0.852
maf
Maf-like protein maf (187 aa)
              0.749
HMPREF9018_1356
Haloacid dehalogenase-like hydrolase (234 aa)
     
 
    0.707
guaB
Inosine-5’-monophosphate dehydrogenase (494 aa)
   
 
  0.642
lpxC
UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis (461 aa)
     
 
  0.632
lpxB
Lipid-A-disaccharide synthase ; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell (382 aa)
 
 
  0.578
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (13%) [HD]