STRINGSTRING
trkA protein (Prevotella amnii) - STRING interaction network
"trkA" - Potassium transporter peripheral membrane component in Prevotella amnii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trkAPotassium transporter peripheral membrane component (446 aa)    
Predicted Functional Partners:
HMPREF9018_1873
Cation transport protein (485 aa)
 
 
  0.996
dxs
1-deoxyxylulose-5-phosphate synthase ; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) (642 aa)
   
        0.882
HMPREF9018_1925
Transporter, CPA2 family (735 aa)
         
  0.532
HMPREF9018_1878
Uncharacterized protein (336 aa)
 
          0.523
HMPREF9018_0266
NOL1/NOP2/sun family protein (439 aa)
   
        0.520
secD
Export membrane protein SecD ; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (1008 aa)
         
  0.493
HMPREF9018_1876
Uncharacterized protein (148 aa)
              0.465
pheT
Phenylalanyl-tRNA synthetase beta subunit (822 aa)
              0.448
guaB
Inosine-5’-monophosphate dehydrogenase (494 aa)
         
  0.440
coaE
Dephosphocoenzyme A kinase ; Catalyzes the phosphorylation of the 3’-hydroxyl group of dephosphocoenzyme A to form coenzyme A (192 aa)
              0.436
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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