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hsdR protein (Prevotella amnii) - STRING interaction network
"hsdR" - Type I site-specific deoxyribonuclease, HsdR family in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsdRType I site-specific deoxyribonuclease, HsdR family (988 aa)    
Predicted Functional Partners:
HMPREF9018_1909
N-6 DNA Methylase (301 aa)
 
   
  0.993
HMPREF9018_1910
Uncharacterized protein (237 aa)
 
   
  0.990
HMPREF9018_1912
Type I restriction modification DNA specificity domain protein (399 aa)
 
   
  0.984
HMPREF9018_1911
Uncharacterized protein (367 aa)
 
          0.972
HMPREF9018_1908
Uncharacterized protein (612 aa)
   
        0.848
HMPREF9018_1471
Sigma-70 region 2 ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (290 aa)
       
 
  0.722
HMPREF9018_1315
Divergent AAA domain protein (514 aa)
   
        0.629
HMPREF9018_1915
DNA-binding helix-turn-helix protein (94 aa)
              0.592
HMPREF9018_1914
Fic family protein (320 aa)
              0.589
HMPREF9018_2056
Sigma-70, region 4 ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (228 aa)
       
 
  0.585
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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