STRINGSTRING
HMPREF9018_1936 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1936" - Uncharacterized protein in Prevotella amnii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1936Uncharacterized protein (333 aa)    
Predicted Functional Partners:
HMPREF9018_1935
Xaa-His dipeptidase (486 aa)
              0.857
HMPREF9018_1068
GH3 auxin-responsive promoter (503 aa)
   
          0.750
HMPREF9018_1975
Uncharacterized protein (423 aa)
   
          0.737
HMPREF9018_0575
Uncharacterized protein (108 aa)
   
          0.730
HMPREF9018_0693
Uncharacterized protein (264 aa)
   
          0.725
HMPREF9018_1903
Uncharacterized protein (219 aa)
   
          0.698
HMPREF9018_1705
Uncharacterized protein (180 aa)
   
          0.698
HMPREF9018_0786
Uncharacterized protein (220 aa)
   
          0.680
HMPREF9018_0162
Uncharacterized protein (178 aa)
   
          0.680
ksgA
S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (267 aa)
              0.665
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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