STRINGSTRING
HMPREF9018_1958 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1958" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1958Uncharacterized protein (385 aa)    
Predicted Functional Partners:
HMPREF9018_1959
Polysaccharide biosynthesis protein (477 aa)
 
          0.907
HMPREF9018_1956
Bacterial transferase hexapeptide repeat protein (202 aa)
              0.806
HMPREF9018_1957
Uncharacterized protein (319 aa)
              0.805
HMPREF9018_1955
Uncharacterized protein (57 aa)
              0.610
HMPREF9018_1964
Uncharacterized protein (361 aa)
 
          0.590
HMPREF9018_1965
Putative phosphoribosylamine--glycine ligase (402 aa)
 
          0.566
HMPREF9018_1960
Uncharacterized protein (378 aa)
              0.557
HMPREF9018_0860
Uncharacterized protein (550 aa)
   
          0.542
HMPREF9018_1954
Nucleotide sugar dehydrogenase (418 aa)
              0.480
HMPREF9018_1322
Site-specific recombinase, phage integrase family (407 aa)
   
          0.475
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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